[Up] [Previous] [Index]

3 Interface to CARAT

Sections

  1. Action from the left and from the right
  2. CARAT input and output files
  3. Executing CARAT commands
  4. Methods provided by CARAT
  5. CARAT Bravais Catalog
  6. CARAT Q-Class Catalog

The GAP interface to CARAT consists of two parts, low level interface routines to CARAT functions on the one hand, and comfortable high level GAP functions on the other hand. The high level functions, implemented in terms of the low level functions, provide actually methods for functions and operations declared in the GAP library.

Note that while (almost) all CARAT functions should be accessible from within GAP by the low level interface routines, high level interface routines are provided only for a small subset of the CARAT functions. Priority has been given to routines providing functionality that has previously not been available in GAP. Further high level interface routines may be added in the future.

3.1 Action from the left and from the right

In crystallography, the convention usually is that matrix groups act from the left on column vectors. This convention is adopted also in CARAT. The low level interface routines described below must respect this convention and provide CARAT with data in the expected format.

On the other hand, in GAP the convention is that all groups act from the right, in the case of matrix groups on row vectors. However, in order to make GAP accessible to crystallographers, functions that are important in crystallography and for which it matters which action is assumed, are provided in two variants, one for each convention. The high level routines currently provided by this package do not depend on which convention is assumed. This may change, however, when further high level routines are added in the future.

3.2 CARAT input and output files

CARAT routines read their input from one or several input files, and write the result to standard output. In order to use CARAT routines from within GAP, the input must be prepared in suitably formatted input files. A CARAT command is then executed with these input files, with standard output redirected to an output file, which is read back into GAP afterwards. This section describes routines interfacing with CARAT input and output files.

Working with CARAT requires many temporary files. When the CARAT package is loaded, a temporary directory is created, where one can put such files. The routine

  • CaratTmpFile( filename ) F

    returns a file name filename in the CARAT temporary directory, which can be used to store temporary data. Of course, it is also possible to use any other file name, for instance files in the current directory.

  • CaratShowFile( filename ) F

    displays the contents of any text file on the terminal. This can be used to inspect the contents of CARAT input and output files.

    Most CARAT data files are in either of two formats. The first CARAT file type is the Matrix File, containing one or several matrices. The following routines serve as interface to CARAT Matrix Files.

  • CaratWriteMatrixFile( filename, data ) F

    takes a file name and a matrix or a list of matrices, and writes the matrix or matrices to the file.

  • CaratReadMatrixFile( filename ) F

    reads a CARAT matrix file, and returns a matrix or a list of matrices read from the file.

    The second CARAT file type is the Bravais File, containing information on a finite unimodular group. In GAP, the contents of a Bravais File is represented by a Bravais record, having the following components:

    generators
    generators of the finite unimodular group

    formspace
    basis of the space of invariant forms (optional)

    centerings
    list of centering matrices (optional)

    normalizer
    additional generators of the normalizer in GL(n,Z) (optional)

    centralizer
    additional generators of the centralizer in GL(n,Z) (optional)

    size
    size of the unimodular group (optional)

    The following routines serve as interface to CARAT Bravais Files.

  • CaratWriteBravaisFile( filename, data ) F

    takes a file name and a Bravais record, and writes the data in the Bravais record to the file.

  • CaratReadBravaisFile( filename ) F

    reads a Bravais File, and returns the resulting Bravais record.

    Certain CARAT programs produce output files containing several Bravais records, possibly preceeded by a varying number of header lines.

  • CaratReadMultiBravaisFile( filename ) F

    reads such a multi-Bravais file, and returns a record with the components info and groups. info is the list of header lines before the first Bravais record starts, and groups is the list of Bravais records read from the file.

    3.3 Executing CARAT commands

    To execute a CARAT program from within GAP, some low level, general purpose routines are provided in this package. Higher level routines for certain CARAT functions may be available in the GAP library or in other packages. These higher level functions are expected to use the following low level routines, so that changes in the low level interface will be transparent.

    An arbitrary CARAT program can be executed with the routine

  • CaratCommand( command, args, outfile ) F

    where command is the name of a CARAT program, args is a string containing the command line arguments of the CARAT program, and outfile is the name of the file to which the output is to be written. Example:

    gap> CaratCommand( "Z_equiv", "file1 file2", "file.out" );
    

    A short description of the arguments and options of any CARAT program can be obtained from the CARAT online help facility with

  • CaratHelp( command ) F

    where command is the name of the CARAT program. CaratHelp executes the program with the -h option, and writes the output to the terminal. Example:

    gap> CaratHelp( "Z_equiv" );
    

    A list of all CARAT programs, along with a description of their usage and functionality, can be found in the CARAT documentation (in HTML), in the file

    documentation/introduction.html
    

    in the CARAT home directory.

    3.4 Methods provided by CARAT

    CARAT implements methods for the following functions and operations declared in the GAP library. For a detailed description of these functions, please consult the GAP manual (section Matrix Groups in Characteristic 0).

  • BravaisGroup( G ) A

  • IsBravaisGroup( G ) P

  • BravaisSubgroups( G ) A

  • BravaisSupergroups( G ) A

  • NormalizerInGLnZBravaisGroup( G ) A

  • Normalizer( GL(n, Integers), G ) O

  • Centralizer( GL(n, Integers), G ) O

  • ZClassRepsQClass( G ) A

  • RepresentativeAction( GL(n,Integers), G1, G2 ) O

    3.5 CARAT Bravais Catalog

    CARAT contains a catalog with Z-class representatives of all Bravais groups of dimension up to 6. These Bravais groups are accessed via a crystal family symbol.

  • CaratCrystalFamilies [d] V

    returns a list of inequivalent crystal family symbols in dimension d.

  • BravaisGroupsCrystalFamily( symb ) F

    returns a list of Z-class representatives of the Bravais groups in the crystal family with symbol symb.

    3.6 CARAT Q-Class Catalog

    CARAT contains a catalog with representatives of all Q-classes of finite unimodular groups up to dimension 6. This catalog can be accessd with the function

  • CaratQClassCatalog( grp, mode ) F

    where grp is a finite unimodular group of dimension up to 6, and mode is an integer. This function returns a record with one or several of the following components, depending on the decomposition of mode = n0 + n1 * 2 + n2 * 4 into powers of 2:

    qclass
    Q-class symbol; this component is always present

    familysymb
    crystal family symbol (present if n0 < > 0)

    trans
    transformation to standard representative of Q-class: grp^trans = std (present if n1 < > 0)

    group
    standard representative of Q-class of grp (present if n2 < > 0 )

    If G1 and G2 are two unimodular groups,

  • ConjugatorQClass( G1, G2 ) F

    returns a rational matrix m such that G1^m = G2, or fail, if the groups are not in the same Q-class. Since this function uses the CARAT Q-class catalog, only groups up to dimension 6 are supported. If this dimension is exceeded, an error is reported.

    [Up] [Previous] [Index]

    CARAT manual
    May 2016